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Daniel Stöckel, M. Sc.

Employment: 
Researcher
Personal: 

My name is Daniel Stöckel. I am a PhD student on the chair of Professor Hans-Peter Lenhof. On this site you can find information on my research interests, publications and teaching conducted by me.

Education: 

I obtained my Abitur in 2005. In 2008 i finished my Bachelor of Science in Bioinformatics at the Saarland University and was admitted to the Graduate School Program. I obtained my Master of Science in Bioinformatics in early 2010.

Research: 

My research interests lie in the field of structural bioinformatics, especially molecular docking. Here I am working on the development of new scoring functions with a focus on data driven and hybrid approaches. I also collaborate with other members of my group in the field of network and transcription analysis.

Teaching: 

Tutoring

  • Programming I (WS 06/07)
  • Programming II (SS 07)
  • Softwarepraktikum (SS 07)
  • Mathematics for Computer Scientists - Tutorial for Bioinformaticians (WS 07/08)
  • Programming II (SS 08)
  • Bioinformatics II (SS 09)

Teaching Assistant

  • Bioinformatics I (WS 10/11)
  • Bioinformatics II (SS 11)
  • Bioinformatics I (WS 11/12)

My Publications

2013

[SMK+13] NetworkTrail - A web service for identifying and visualizing deregulated subnetworks. Daniel Stöckel, Oliver Müller, Tim Kehl, Andreas Gerasch, Christina Backes, Alexander Rurainski, Andreas Keller, Michael Kaufmann and Hans-Peter Lenhof. Bioinformatics (2013) doi: 10.1093/bioinformatics/btt204 [Epub ahead of print]
[LBH+13] D Li, C Beisswenger, C Herr, J Hellberg, G Han, T Zakharkina, M Voss, R Wiewrodt, R M Bohle, M D Menger, R M Schmid, D Stöckel, H-P Lenhof and R Bals. Myeloid cell RelA/p65 promotes lung cancer proliferation through Wnt/β-catenin signaling in murine and human tumor cells. Oncogene, doi: 10.1038/onc.2013.75, 25 January 2013 [EPub ahead of print]

2012

[BDZ+12] Bogojeska, J., Stöckel, D., Zazzi, Z., Rolf, K., Francesca, I., Michal, R-Z., Lengauer, T. History-alignment models for bias-aware prediction of virological response to HIV combination therapy. AISTATS 2012.

2011

[BRK+11] Backes, C., Rurainski, A., Klau, G.W., Müller, O., Stöckel, D., Gerasch, A., Küntzer, J., Maisel, D., Ludwig, N., Hein, M., Keller, A., Burtscher, H., Kaufmann, M., Meese, E. & Lenhof, H.-P. (2011). An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res., 2011 Dec. 30 [E pub ahead of print].

2010

[HDR+10] Hildebrandt, A., Dehof, A.K., Rurainski, A., Bertsch, A., Schumann, M., Toussaint, N.C., Moll, A., Stöckel, D., Nickels, S., Müller, S.C., Lenhof, H.-P. & Kohlbacher, O. (2010). BALL - Biochemical Algorithms Library 1.3. BMC Bioinformatics, 2010, 11:531.

Old Publications

Contact

Address:
Center for Bioinformatics
Saarland University
Building E 2.1
Room 402
P.O. Box 15 11 50
66041 Saarbrücken Germany
Email:
dstoeckel [AT] bioinf.uni-sb.de
Fax:
+49-681-302-64719
Phone:
+49-681-302-70896