Prof. Dr. Hans-Peter Lenhof
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This is the personal page of Hans-Peter Lenhof
My Publications
2013
[SMK+13] NetworkTrail - A web service for identifying and visualizing deregulated subnetworks. Daniel Stöckel, Oliver Müller, Tim Kehl, Andreas Gerasch, Christina Backes, Alexander Rurainski, Andreas Keller, Michael Kaufmann and Hans-Peter Lenhof. Bioinformatics (2013) doi: 10.1093/bioinformatics/btt204 [Epub ahead of print]
[DLL+13]
Dehof, A.K., Loew, S., Lenhof, H.-P., & Hildebrandt, A. (2013).
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.
BMC Bioinformatics. 2013 Mar 16;14(1):98. [Epub ahead of print]
[LBH+13] D Li, C Beisswenger, C Herr, J Hellberg, G Han, T Zakharkina, M Voss, R Wiewrodt, R M Bohle, M D Menger, R M Schmid, D Stöckel, H-P Lenhof and R Bals. Myeloid cell RelA/p65 promotes lung cancer proliferation through Wnt/β-catenin signaling in murine and human tumor cells. Oncogene, doi: 10.1038/onc.2013.75, 25 January 2013 [EPub ahead of print]
2012
[SBN+12]
Schmitt, J., Backes, C., Nourkami-Tutdibi, N., Leidinger, P., Deutscher, S., Beier, M., Gessler, M., Graf, N., Lenhof, H.-P., Keller, A. & Meese, E. (2012). Treatment-independent miRNA signature in blood of wilms tumor patients.
BMC Genomics. 2012 Aug 7;13(1):379. [Epub ahead of print]
[NSM+12]
Nickels, S, Sminia, H, Mueller, S, Kools, B, A.K. Dehof, H.-P. Lenhof, and A. Hildebrandt: (2012) ProteinScanAR - An augmented reality web application for high school education in biomolecular life sciences. Proceedings of the 6th International Symposium on Information Visualization in Biomedical Informatics (IVBI 2012).
[LKL+12]
Ludwig, N., Keller, A., Leidinger, P., Harz, C., Backes, C., Lenhof, H.-P. & Meese, E. (2012). Is there a general autoantibody signature for cancer?
Eur J Cancer. 2012 Feb 22. [Epub ahead of print]
[LLH+12]
Laczny, C., Leidinger, P., Haas, J., Ludwig, N., Backes, C., Gerasch, A., Kaufmann, M., Vogel, B., Katus, H.-A., Meder, B., Stahler, C., Meese, E., Lenhof, H.-P. & Keller, A. (2012). miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases.
BMC Bioinformatics, 2012 Feb 22;13(1):36. [Epub ahead of print]
2011
[BRK+11] Backes, C., Rurainski, A., Klau, G.W., Müller, O., Stöckel, D., Gerasch, A., Küntzer, J., Maisel, D., Ludwig, N., Hein, M., Keller, A., Burtscher, H., Kaufmann, M., Meese, E. & Lenhof, H.-P. (2011). An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res., 2011 Dec. 30 [E pub ahead of print].
[SKN+11]
Schmitt, J., Keller, A., Nourkami-Tutdibi, N., Heisel, S., Habel, N., Leidinger, P., Ludwig, N., Gessler, M., Graf, N., Berthold, F., Lenhof, H.-P. & Meese, E. (2011). Autoantibody signature differentiates wilms tumor patients from neuroblastoma patients. PLoS One, 2011 Dec. 16 [E pub ahead of print].
[SHK+11]
Schmitt, J., Heisel, S., Keller, A., Leidinger, P., Ludwig, N., Habel, N., Furtwängler, R., Nourkami-Tutdibi, N., Wegert, J., Grundy, P., Gessler, M., Graf, N., Lenhof, H.-P. & Meese, E. (2011). Multicenter study identified molecular blood-born protein signatures for Wilms Tumor. Int J Cancer, 2011 Sep. 12 [E pub ahead of print].
[DLH11] Dehof, A.K., Lenhof, H.-P. & Hildebrandt, A. (2011). Predicting Protein NMR Chemical Shifts in the Presence of Ligands and Ions using Force Field-based Features. Proceedings of the German Conference on Bioinformatics (GCB 2011).
[KLB+11]
Keller, A., Leidinger, P., Bauer, A., Elsharawy, A., Haas, A., Backes, C., Wendschlag, A., Giese, N., Tjaden, C., Ott, K., Werner, J., Hackert, T., Ruprecht, K., Huwer, H., Huebers, J., Jacobs, G., Rosenstiel, P., Dommisch, H., Schaefer, A., Müller-Quernheim, J., Wullich, B., Keck, B., Graf, N., Reichrath, J., Vogel, B., Nebel, A., Jager, SU, Staehler, P., Amarantos, I., Biosquerin, V., Staehler, C., Beier, M., Scheffler, M., Büchler, MW., Wischhusen, J., Haeusler, SF, Dietl, J., Hofmann, S., Lenhof, H.-P., Schreiber, S., Katus, HA., Rottbauer, W., Meder, B., Hoheisel, JD., Franke, A. & Meese, E. (2011). Toward the blood-borne miRNome of human diseases. Nat Methods 2011 Sep. 4 [E pub ahead of print].
[BLL+11]
Backes, C., Ludwig, N., Leidinger, P., Harz, C., Hoffmann, J., Keller, A., Meese, E. & Lenhof, H.-P. (2011). Immunogenicity of autoantigens. BMC Genomics, 2011 Jul 4; 12(1):340. [E pub ahead of print].
[SKB+11]
Schuler, M., Keller, A., Backes, C., Phillipar, K., Lenhof, H.-P. & Bauer, P. (2011). Transcriptome analysis by Gene Trail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana. BMC Plant Biology, 2011, May, 18, 11:87.
[KML+11]
Küntzer, J., Maisel, D., Lenhof, H.-P., Klostermann, S. & Burtscher H. (2011). The Roche Cancer Genome Database 2.0. BMC Med Genomics, 2011 May 17;4(1):43 [E pub ahead of print].
[KLG+11]
Keller, A., Leidinger, P., Gislefoss, R., Haugen, A., Langseth, H., Staehler, P., Lenhof, H.-P. & Meese, E. (2011). Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis. RNA Biol., 8(3), 506-16,2011. E pub May 1, 2011.
[LKB+11]
Leidinger, P., Keller, A., Borries, A. Huwer, H., Rohling, M. Huebers, J., Lenhof, H.-P. & Meese, E. (2011). Specific peripheral miRNA profiles for distinguishing lung cancer from COPD. Lung Cancer, 74(1): 41-7, 2011. Epub 2011 Mar 8.
[DRB+11] Dehof, A.K., Rurainski, A., Bui, Q.B.A., Böcker, S., Lenhof, H.-P. & Hildebrandt, A. (2011). Automated Bond Order Assignment as an Optimization Problem. Bioinformatics, 2011 January 17 [E pub ahead of print].
2010
[HDR+10] Hildebrandt, A., Dehof, A.K., Rurainski, A., Bertsch, A., Schumann, M., Toussaint, N.C., Moll, A., Stöckel, D., Nickels, S., Müller, S.C., Lenhof, H.-P. & Kohlbacher, O. (2010). BALL - Biochemical Algorithms Library 1.3. BMC Bioinformatics, 2010, 11:531.
[MDGL+10] L. Marsalek, A.K. Dehof, I. Georgiev, H.-P. Lenhof, P. Slusallek and A. Hildebrandt: (2010) Real-time Ray Tracing of Complex Molecular Scenes. Proceedings of the IVbm 10 - Information Visualization in Biomedical Informatics
[MTH+10]
Melchior, K., Tholey, A., Heisel, S., Keller, A., Lenhof, H.-P., Meese, E. & Huber CG. (2010). Protein-versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples. J Chromatogr A. 2010 Juli 21. [Epub ahead of print].
[LKB+10]
Leidinger, P., Keller, A., Borries, A., Reichrath, J., Rass, K., Jager, S.U., Lenhof, H.-P. & Meese, E.. (2010). High-throughput miRNA profiling of human melanoma blood samples. BMC Cancer 2010, 10:262.
[FLK+10]
Fischer, U., Leidinger, P., Keller, A., Folarin, A., Ketter, R., Graf, N., Lenhof, H.-P. & Meese, E. (2010). Amplicons on chromosome 12q13-21 in glioblastoma recurrences. Int J Cancer, 2010, 126(11):2594-602.
[PGDN+10] M. Phillips, I. Georgiev, A.K. Dehof, L. Marsalek, H.-P. Lenhof, A. Hildebrandt, and P. Slusallek: (2010) Measuring Properties of Molecular Surfaces Using Ray Casting. HiCOMB 2010, Proceedings of 9th International Workshop on High Performance Computational Biology
[LKH+10]
Ludwig, N., Keller, A., Heisel, S., Leidinger, P., Rheinheimer, S., Andres, C., Stephan, B., Steudel, W.-I., Donauer, E., Graf, N., Burgeth, B., Weickert, J., Lenhof, H.-P., & Meese, E. (2010). Novel immunogenic antigens increase classification accuracy in meningioma to 93.84%. Int J Cancer, 9999(999A)
