Patrick Trampert, M. Sc.
Employment:
Researcher
Personal:
This is the personal homepage of Patrick Trampert.
Education:
- Allgemeine Hochschulreife, Ludwigsgymnasium Saarbrücken, Juni 2002
- Job Training as IT Specialist Systemintegration
- Prediploma Mathematics, Saarland University, November 2006
- "Prepedagogium" Educational Sciences, Saarland University, June 2007
- Bachelor of Science (Computer Sciences), Saarland University, February 2010
- Master of Science (Computer Sciences),Saarland University, February 2012
Teaching:
Tutoring:
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SS05
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Programming II
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WS05/06
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Linear Algebra I
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SS06
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Programming II
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WS06/07
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Programming for Mathematicians
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SS07
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Preparatory Course: Mathematics for Computer Scientists (Tutor)
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WS07/08
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Mathematics for Computer Scientists I
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SS08
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Mathematics for Computer Scientists II
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WS08/09
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Mathematics for Computer Scientists III
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SS09
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Systemarchitecture
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Mathematical Optimisation
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Euclidian Geometry
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WS09/10
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Mathematics for Computer Scientists I
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SS10
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Mathematics for Computer Scientists II
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WS10/11
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Mathematics for Computer Scientists III
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SS11
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Mathematics for Computer Scientists II
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WS11/12
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Mathematics for Computer Scientists III
Teaching Assistant:
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Didactics I: Introduction to Mathematics Education
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Bioinformatics II
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Proseminar "Bioinformatic Approaches for Cancer Research"
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Proseminar "Efficient Algorithms for RNA molecules"
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Bioinformatics I (Busy Beaver Award - Prize for best lecture core courses)
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Proseminar "Bioinformatic Approaches for Cancer Research"
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Seminar "Modelling and Analyzing Biological Networks"
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Bioinformatics II
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Proseminar "Bioinformatic Approaches for Cancer Research"
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Seminar "Inferring Network Structure from Data"
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Bioinformatics I
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Proseminar "Bioinformatic Approaches for Cancer Research"
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Seminar "Inferring Network Structure from Data"
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Bioinformatics II
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Proseminar "Bioinformatic Approaches for Cancer Research"
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Seminar "Inferring Network Structure from Data"
Teaching:
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Preparatory Course: Probability Theory and Statistics for Bioinformaticians
Supervision:
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Florian Schmidt, Bachelor (finished)
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Title: "Identification of deregulated paths in metabolic networks"
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Tim Kehl, Bachelor (finished)
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Title: "PiDGEon: A Next-Generation-Sequencing Pipeline to detect differential gene expression."
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Sebastian Schattner, Bachelor (finished)
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Title: "Batch Processing Library for Biological Images with Graphical User Interface."
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Nima Zeini, Master
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Title: "TBA"
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Sven Hafeneger, Master (finished)
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Title: "Determine Surivival-related Biomarkers using Undirected Graphical Models"
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Robert Kirsten, Master
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Title: "Construction of causal interaction networks using multiple mRNA microarray experiments."
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Christine Jaeckels, Master
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Title: "TBA"
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Christina Kiefer, Bachelor
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Title: "RNA Chemical Shift Prediction"
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Valentina Galata, Master (finished)
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Title: "Incorporation of Prior Knowledge into Structure Learning of Causal Bayesian Networks"
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Tim Kehl, Master
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Working Title: "GeneTrail 2"
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Florian Schmidt, Master
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Title: "TBA"
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Julia Jauss, Bachelor
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Title: "TBA"
My Publications
2016
[SKT+16] Stöckel, D., Kehl, T., Trampert, P., Schneider, L., Backes, C., Ludwig, N., Gerasch, A., Kaufmann, M., Gessler, M., Graf, N., Meese, E., Keller, A., Lenhof, H.P.,: Multi-omics Enrichment Analysis using the GeneTrail2 Web Service. Bioinformatics 2016; doi: 10.1093/bioinformatics/btv770
2015
[SST+15]
Stöckel, D., Schmidt, F., Trampert, P., and Lenhof, H.-P.: CausalTrail: Testing hypothesis using causal Bayesian networks. F1000Research 2015, 4(ISCB Comm J):1520, doi: 10.12688/f1000research.7647.1
