Anna Katharina Dehof
My Publications
2014
[AKH+14] Hildebrandt, A. K., Stöckel D., Fischer, N. M., de la Garza, L., Krüger, J., Nickels, S., Röttig, M., Schärfe, C., Schumann, M., Thiel, P., Lenhof, H.-P., Kohlbacher, O., and Andreas Hildebrandt, ballaxy: web services for structural bioinformatics, Bioinformatics 2014, doi: 10.1093/bioinformatics/btu574
2013
[CEG+13] Cabezas-Wallscheid, N., Eichwald, V., de Graaf, J., Löwer, M., Lehr, H.-A., Kreft, A., Eshkind, L., Hildebrandt, A., Abassi, Y., Heck, R., Dehof, A. K., Ohngemach, S., Sprengel, R., Wörtge, S., Schmitt, S., Lotz, J., Meyer, C., Kindler, T., Zhang, D.-E., Kaina, B., Castle, J. C., Trumpp, A., Sahin, U. and Bockamp, E.: Instruction of haematopoietic lineage choices, evolution of transcriptional landscapes and cancer stem cell hierarchies derived from an AML1-ETO mouse model. EMBO Mol Med. doi: 10.1002/emmm.201302661, 2013.
[NSM+13] Nickels, S., Stöckel, D., Mueller, S.C., Lenhof, H.-P., Hildebrandt, A., and Dehof, A.K.: PresentaBALL – a Powerful Package for Presentations and Lessons in Structural Biology. BioVis - 3rd IEEE Symposium on Biological Data Visualization, 2013.
[HEL+13] Hildebrandt, A.K., Althaus, E., Lenhof, H.P., Hung, C.W., Tholey, A., and Hildebrandt, A.: Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics. Proceedings of the German Conference on Bioinformatics (GCB), 2013.
[DLL+13]
Dehof, A.K., Loew, S., Lenhof, H.-P., & Hildebrandt, A.: NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction. BMC Bioinformatics, 14(1):98, 2013.
2012
[NSM+12]
Nickels, S, Sminia, H, Mueller, S, Kools, B, A.K. Dehof, H.-P. Lenhof, and A. Hildebrandt: (2012) ProteinScanAR - An augmented reality web application for high school education in biomolecular life sciences. Proceedings of the 6th International Symposium on Information Visualization in Biomedical Informatics (IVBI 2012).
2011
[DLH11] Dehof, A.K., Lenhof, H.-P., and Hildebrandt, A.: Predicting Protein NMR Chemical Shifts in the Presence of Ligands and Ions using Force Field-based Features. Proceedings of the German Conference on Bioinformatics (GCB), 2011.
[DRB+11] Dehof, A.K., Rurainski, A., Bui, Q.B.A., Böcker, S., Lenhof, H.-P. & Hildebrandt, A.: Automated Bond Order Assignment as an Optimization Problem. Bioinformatics, 27(13), 2011.
2010
[HDR+10]
Hildebrandt, A., Dehof, A.K., Rurainski, A., Bertsch, A., Schumann, M., Toussaint, N.C., Moll, A., Stöckel, D., Nickels, S., Müller, S.C., Lenhof, H.-P. & Kohlbacher, O.: BALL - Biochemical Algorithms Library 1.3. BMC Bioinformatics, 11:531, 2010.
[SER+10]
Singh, K.K., Erkelenz, S., Rattay, S., Dehof, A.-K., Hildebrandt, A., Schulze-Osthoff, K., Schaal, H., and Schwerk, C.: Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold. RNA, 2010, 16(12), 2442-2454, 2010.
[MDG+10]
Marsalek, L., Georgiev, I., Dehof, A.K., Lenhof, H.-P., Slusallek, P., and Hildebrandt, A.: Real-time Ray Tracing of Complex Molecular Scenes. Proceedings of the IVbm 10 - Information Visualization in Biomedical Informatics, 2010.
[PGDN+10] M. Phillips, I. Georgiev, A.K. Dehof, L. Marsalek, H.-P. Lenhof, A. Hildebrandt, and P. Slusallek: (2010) Measuring Properties of Molecular Surfaces Using Ray Casting. HiCOMB 2010, Proceedings of 9th International Workshop on High Performance Computational Biology
2009
[DGMS+09] A. K. Dehof, I. Georgiev, L. Marsalek, D. Stöckel, S. Nickels, H.-P. Lenhof, P. Slusallek and A. Hildebrandt (2009): Visual Computing in Computer Aided Drug Design. Visual Computing Research Conference, Saarbrücken, Germany, 8-10 December 2009
[DRL+09] Dehof, A. K., Rurainski, A., Lenhof, H.-P., and Hildebrandt, A.: Automated Bond Order Assignment as an Optimization Problem. Proceedings of the German Conference on Bioinformatics (GCB), Lecture Notes in Informatics, 2009.
[BRFD+05]
K.H. Brämswig, A.B. Riemer, E. Förster-Waldl, A. Dehof, D. Neumann, H.N. Lode, C. Zielinski, O. Scheiner, H. Pehamberger, E. Jensen-Jarolim (2005): Generation of Peptide mimics of Melanoma Antigen GD2. Proceedings of the 35th Annual European Society for Dermatological Research (ESDR) Meeting, Journal of Investigative Dermatology 125(S1:A35)
[FRDN+05]
E. Förster-Waldl, A.B. Riemer, A.K. Dehof, D. Neumann, K.H. Brämswig, G. Boltz-Nitulescu, H. Pehamberger, C. Zielinski, O. Scheiner, A. Plloak, H.N. Lode, and E. Jensen-Jarolim: (2004) Isolation and structural analysis of peptide mimotopes for the disialoganglioside GD2, a neuroblastoma tumor antigen Molecular Immunology
