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Prof. Dr. Hans-Peter Lenhof - Publications
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[BRK+11]
- Backes, C., Rurainski, A., Klau, G.W., Müller, O., Stöckel, D., Gerasch, A., Küntzer, J., Maisel, D., Ludwig, N., Hein, M., Keller, A., Burtscher, H., Kaufmann, M., Meese, E. & Lenhof, H.-P. (2011). An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res., 2011 Dec. 30 [E pub ahead of print].
- [SKN+11]
- Schmitt, J., Keller, A., Nourkami-Tutdibi, N., Heisel, S., Habel, N., Leidinger, P., Ludwig, N., Gessler, M., Graf, N., Berthold, F., Lenhof, H.-P. & Meese, E. (2011). Autoantibody signature differentiates wilms tumor patients from neuroblastoma patients. PLoS One, 2011 Dec. 16 [E pub ahead of print].
- [SHK+11]
- Schmitt, J., Heisel, S., Keller, A., Leidinger, P., Ludwig, N., Habel, N., Furtwängler, R., Nourkami-Tutdibi, N., Wegert, J., Grundy, P., Gessler, M., Graf, N., Lenhof, H.-P. & Meese, E. (2011). Multicenter study identified molecular blood-born protein signatures for Wilms Tumor. Int J Cancer, 2011 Sep. 12 [E pub ahead of print].
- [KLB+11]
- Keller, A., Leidinger, P., Bauer, A., Elsharawy, A., Haas, A., Backes, C., Wendschlag, A., Giese, N., Tjaden, C., Ott, K., Werner, J., Hackert, T., Ruprecht, K., Huwer, H., Huebers, J., Jacobs, G., Rosenstiel, P., Dommisch, H., Schaefer, A., Müller-Quernheim, J., Wullich, B., Keck, B., Graf, N., Reichrath, J., Vogel, B., Nebel, A., Jager, SU, Staehler, P., Amarantos, I., Biosquerin, V., Staehler, C., Beier, M., Scheffler, M., Büchler, MW., Wischhusen, J., Haeusler, SF, Dietl, J., Hofmann, S., Lenhof, H.-P., Schreiber, S., Katus, HA., Rottbauer, W., Meder, B., Hoheisel, JD., Franke, A. & Meese, E. (2011). Toward the blood-borne miRNome of human diseases. Nat Methods 2011 Sep. 4 [E pub ahead of print].
- [DLH11]
- Dehof, A.K., Lenhof, H.-P. & Hildebrandt, A. (2011). Predicting Protein NMR Chemical Shifts in the Presence of Ligands and Ions using Force Field-based Features. Proceedings of the German Conference on Bioinformatics (GCB 2011).
- [BLL+11]
- Backes, C., Ludwig, N., Leidinger, P., Harz, C., Hoffmann, J., Keller, A., Meese, E. & Lenhof, H.-P. (2011). Immunogenicity of autoantigens. BMC Genomics, 2011 Jul 4; 12(1):340. [E pub ahead of print].
- [KML+11]
- Küntzer, J., Maisel, D., Lenhof, H.-P., Klostermann, S. & Burtscher H. (2011). The Roche Cancer Genome Database 2.0. BMC Med Genomics, 2011 May 17;4(1):43 [E pub ahead of print].
- [SKB+11]
- Schuler, M., Keller, A., Backes, C., Phillipar, K., Lenhof, H.-P. & Bauer, P. (2011). Transcriptome analysis by Gene Trail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana. BMC Plant Biology, 2011, 11:87.
- [KLG+11]
- Keller, A., Leidinger, P., Gislefoss, R., Haugen, A., Langseth, H., Staehler, P., Lenhof, H.-P. & Meese, E. (2011). Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis. RNA Biol., 2011 May 1;8(3) [E pub ahead of print].
- [LKB+11]
- Leidinger, P., Keller, A., Borries, A. Huwer, H., Rohling, M. Huebers, J., Lenhof, H.-P. & Meese, E. (2011). Specific peripheral miRNA profiles for distinguishing lung cancer from COPD. Lung Cancer, 2011 March 7 [E pub ahead of print].
- [DRB+11]
- Dehof, A.K., Rurainski, A., Bui, Q.B.A., Böcker, S., Lenhof, H.-P. & Hildebrandt, A. (2011). Automated Bond Order Assignment as an Optimization Problem. Bioinformatics, 2011 January 17 [E pub ahead of print].
- [NKG+10]
- Nieselt, K., Kaufmann, M., Gerasch, A., Lenhof, H.-P., Spehr, M., Hesse, S. & Gumhold, S. (2010). Visuelle Analytik biologischer Daten. Informatik Spektrum, Online First™, 29 September 2010.
- [MTH+10]
- Melchior, K., Tholey, A., Heisel, S., Keller, A., Lenhof, H.-P., Meese, E. & Huber CG. (2010). Protein-versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples. J Chromatogr A. 2010 Juli 21. [Epub ahead of print].
- [FLK+10]
- Fischer, U., Leidinger, P., Keller, A., Folarin, A., Ketter, R., Graf, N., Lenhof, H.-P. & Meese, E. (2010). Amplicons on chromosome 12q13-21 in glioblastoma recurrences. Int J Cancer, 2010, 126(11):2594-602.
- [HDR+10]
- Hildebrandt, A., Dehof, A.K., Rurainski, A., Bertsch, A., Schumann, M., Toussaint, N.C., Moll, A., Stöckel, D., Nickels, S., Müller, S.C., Lenhof, H.-P. & Kohlbacher, O. (2010). BALL - Biochemical Algorithms Library 1.3. BMC Bioinformatics, 2010, 11:531.
- [MGD+10]
- Marsalek, L., Georgiev, I., Dehof, A.K., Lenhof, H.-P., Slusallek, P. & Hildebrandt, A. (2010). Real-Time Ray Tracing of Complex Molecular Scenes. Proceedings of the IVBI 2010 - Information Visualization in Biomedical Informatics.
- [LKB+10]
- Leidinger, P., Keller, A., Borries, A., Reichrath, J., Rass, K., Jager, S.U., Lenhof, H.-P. & Meese, E.. (2010). High-throughput miRNA profiling of human melanoma blood samples. BMC Cancer 2010, 10:262.
- [PGD+10]
- Phillips, M., Georgiev, I, Dehof, A.K., Nickels, S., Marsalek, L., Lenhof, H.-P., Hildebrandt, A. & Slusallek, P. (2010). Measuring Properties of Molecular Surfaces Using Ray Casting. Proceedings of 9th International Workshop on High Performance Computational Biology.
- [LKH+10]
- Ludwig, N., Keller, A., Heisel, S., Leidinger, P., Rheinheimer, S., Andres, C., Stephan, B., Steudel, W.-I., Donauer, E., Graf, N., Burgeth, B., Weickert, J., Lenhof, H.-P., & Meese, E. (2010). Novel immunogenic antigens increase classification accuracy in meningioma to 93.84%. Int J Cancer, 9999(999A), NA.
- [BML+10]
- Backes, C., Meese, E., Lenhof, H.-P., & Keller, A. (2010). A dictionary on microRNAs and their putative target pathways. Nucleic Acids Res. 2010 Mar 18. [Epub ahead of print].
- [LKH+10]
- Leidinger, P., Keller, A., Heisel, S. Ludwig, N., Rheinheimer, S., Klein, V., Andres, C., Staratschek-Jox, A., Wolf, J., Stoelben, E., Stephan, B., Stehle, I., Hamacher, J., Huwer, H., Lenhof, H.-P., & Meese, E. (2010). Identification of lung cancer with high sensitivity and specificity by blood testing. Respiratory Research 2010, 11:18.
- [KEL+10]
- Küntzer, J., Eggle, D., Lenhof, H.-P., Burtscher, H. & Klostermann, S. (2010). The Roche Cancer Genome Database (RCGDB). Hum Mutat. 31, 1-7.
- [FRL+10]
- Fuhrmann, J., Rurainski, A., Lenhof, H.-P., & Neumann, D. (2010). A new Lamarckian genetic algorithm for flexible ligand-receptor docking. J Comput Chem., 31(9), 1911-18..
- [LKH+09]
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Ludwig, N., Keller A., Heisel, S., Leidinger, P., Klein, V., Rheinheimer, S., Andres, C.U., Stephan, B., Steudel, W-I., Graf, N.M., Burgeth, B., Weickert, J., Lenhof, H.-P., & Meese, E. (2009). Improving Seroreactivity-Based Detection of Glioma. Neoplasia, 11 (12): 1383-89.
- [FLK+09]
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Fischer, U., Leidinger, P., Keller A., Folarin, A., Ketter, R., Graf, N., Lenhof, H.-P., & Meese, E. (2009). Amplicons on chromosome 12q13-21 in glioblastoma recurrences. Int J Cancer, 126(11):2594-2602.
- [KLL+09]
- Keller, A., Leidinger, P., Lange, J., Borries, A., Schroers, H., Scheffler, M., Lenhof, H.-P., Ruprecht, K. & Meese, E. (2009). Multiple sclerosis: microRNA expression profiles accurately differentiate patients with relapsing-remitting disease from healthy controls. PLoS One, 4(10):e7440.
- [KLB+09]
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Keller, A., Leidinger, P., Borries, A., Wendschlag, A., Wucherpfennig, F., Scheffler, M., Huwer, H., Lenhof, H.-P., & Meese, E. (2009). miRNAs in lung cancer - Studying complex fingerprints in patient's blood cells by microrarray experiments. BMC Cancer, 9:353.
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[DRL+09]
- Dehof, A.K., Rurainski, A., Lenhof, H.-P., & Hildebrandt, A. (2009). Automated Bond Order Assignment as an Optimization Problem. Lecture Notes in Informatics (LNI) - Proceedings German Conference on Bioinformatics GCB 2009, 201-209.
- [KBG+09]
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Keller, A., Backes, C., Gerasch, A., Kaufmann, M., Kohlbacher, O., Meese, E., & Lenhof, H.-P. (2009). A novel algorithm for detecting differentially regulated paths based on Gene Set Enrichment Analysis. Bioinformatics, 25:2787-94.
- [AKK+09]
- Althaus, E., Klau, G.W., Kohlbacher, O., Lenhof, H.-P., & Reinert, K. (2009). Integer Linear Programming in Computational Biology. Lecture Notes in Computer Science (LNCS). Vol. 5760: Efficient Algorithms, 199-218, Springer.
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[MTH+09]
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Melchior, K., Tholey, A., Heisel, S., Keller, A., Lenhof, H.-P., Meese, E. & Huber C.G. (2009). Proteomic study of human glioblastoma multiforme tissue employing complementary two-dimensional liquid chromatography-mass spectrometry-based approaches. J. Proteome Res., 8(19):4604-14.
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[KLH+09]
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Keller, A., Ludwig, N., Heisel, S., Leidinger, P., Andres, C., Steudel, W.-I., Huwer, H., Burgeth, B., Hein, M., Weickert, J., Meese, E. & Lenhof, H.-P. (2009). Large-scale antibody profiling of human blood sera: The future of molecular diagnosis. Informatik-Spektrum 32(4):332-338.
- [LKH+09]
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Leidinger, P., Keller, A., Heisel, S., Ludwig, N., Rheinheimer, S., Klein, V., Andres, C., Hamacher, J., Huwer, H., Stephan, B., Stehle, I., Lenhof, H.-P., & Meese, E. (2009). Novel autoantigens immunogenic in COPD patients. Respiratory Research 10(1):20.
- [CSB+09]
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Chatterjee, I., Schmitt, S., Batzilla, C.F., Engelmann, S., Keller, A., Ring, M.W., Kautenburger, R., Ziebuhr, W., Hecker, M., Preissner, K.T., Bischoff, M., Proctor, R.A., Beck, H.P., Lenhof, H.-P., Somerville, G.A., Herrmann, M. (2009). Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence. Proteomics 9(5), 1152-76.
- [KBA+08]
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Keller, A., Backes, C., Al-Awadhi, M., Gerasch, A., Küntzer, J., Kohlbacher, O., Kaufmann, M., & Lenhof, H.-P. (2008). Gene TrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics (9), 552.
- [RHL08]
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Rurainski, A., Hildebrandt, A., & Lenhof, H.-P. (2008). A consensus line search algorithm for molecular potential energy functions. J Comput Chem. 30 (9), 1499-1509.
- [FRL+08]
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Fuhrmann, J., Rurainski, A., Lenhof, H.-P. & Neumann, D. (2008). A new method for the gradient-based optimization of molecular complexes. J Comput Chem. 30(9), 1371-78.
- [KLB+08]
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Keller, A., Ludwig, N., Backes, C., Romeike, B.F., Comtesse, N., Henn, W., Steudel, W.I., Mawrin, C., Lenhof, H.-P. & Meese, E. (2008). Genome wide expression profiling identifies specific deregulated pathways in meningioma. Int J Cancer, 124(2), 346-351.
- [KLC+08]
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Keller, A., Ludwig, N., Comtesse, N., Henn, W., Steudel, W.I., Lenhof, H.-P. & Meese, E. (2008). Combining gene expression signatures and autoantibody profiles in human meningioma. Gene Ther. 16, 184-189.
- [LKC+08]
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Ludwig, N., Keller, A., Comtesse, N., Rheinheimer, S., Pallasch, C., Fischer U., Fassbender, K., Steudel, W.I., Lenhof, H.-P. & Meese, E. (2008). Pattern of serum autoantibodies allows accurate distinction between a tumor and pathologies of the same organ. Clin Cancer Res. 14(15), 4767-74.
- [LKL+08]
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Leidinger, P., Keller, A., Ludwig, N., Rheinheimer, S., Hamacher, J., Huwer, H., Stehle, I., Lenhof, H.-P. & Meese, E. (2008). Toward an early diagnosis of lung cancer: An autoantibody signature for squamous cell lung carcinoma. Int J Cancer 123(7), 1631-36.
- [HKK+08]
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Heisel, S.M., Ketter, R., Keller, A., Klein V., Pallasch, C.P., Lenhof, H.-P. & Meese, E. (2008). Increased seroreactivity to glioma-expressed antigen 2 in brain tumor patients under radiation. PLoS ONE, 3(5), e2164.
- [FKL+08]
- Fischer, U., Keller, A., Leidinger, P., Deutscher, S., Heisel, S., Urbschat, S., Lenhof, H.-P. & Meese, E. (2008). A different view on DNA amplifications indicates frequent, highly complex, and stable amplicons on 12q13-21 in glioma. Mol Cancer Res., 6(4), 576-84.
- [KBB+07]
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Küntzer, J., Backes, C., Blum, T., Gerasch, A., Kaufmann, M., Kohlbacher, O., & Lenhof, H.-P. (2007). BNDB - The Biochemical Network Database. BMC Bioinformatics, 8, 367.
- [KBL07]
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Keller, A., Backes, C., & Lenhof, H.-P. (2007). Computation of significance scores of unweighted Gene Set Enrichment Analyses. BMC Bioinformatics, 8, 290.
- [ERS+07]
- Elnakady, Y. A., Rohde, M., Sasse, F., Backes, C., Keller, A., Lenhof, H.-P., Weissmann, K. J., & Müller, R. (2007). Evidence for the Mode of Action of the Highly Cytotoxic Streptomyces Polyketide Kendomycin. Chembiochem. 8(11), 1261-72.
- [HBR+07]
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Hildebrandt, A., Blossey, R., Rjasanow, S., Kohlbacher, O., & Lenhof, H.-P. (2007). Electrostatic potentials of proteins in water: a structured continuum approach. Bioinformatics, Proceedings - European Conference on Computational Biology ECCB 2006 -, 23(2), e99-103.
- [HKL07]
- Hildebrandt, A., Kohlbacher, O., & Lenhof, H.-P. (2007). Modeling protein-protein and protein-dna docking. In T. Lengauer (Eds.), Bioinformatics - From Genomes to Therapies (2, pp. 601-644).
- [CKD+07]
- Comtesse, N., Keller, A., Diesinger, I., Bauer, C., Kayser, K., Huwer, H., Lenhof, H.-P., & Meese, E. (2007). Frequent overexpression of the genes fxr1, clapm1 and eif4g located on amplicon 3q26-27 in squamous cell carcinoma of the lung. Int. J. Cancer, 120(12), 2538-44.
- [KCL+07]
- Keller, A., Comtesse, N., Ludwig, N., Meese, E., & Lenhof, H.-P. (2007). Sepacs--a web-based application for classification of seroreactivity profiles. Nucleic Acids Res., 35, W683-687.
- [BKK+07]
- Backes, C., Keller, A., Küntzer, J., Kneissl, B., Comtesse, N., Elnakady, Y. A., Müller, R., Meese, E., & Lenhof, H.-P. (2007). Genetrail--advanced gene set enrichment analysis. Nucleic Acids Res., 35, W186-192.
- [BKN+06]
- Baldes, C., Koenig, P., Neumann, D., Lenhof, H.-P., Kohlbacher, O., & Lehr, C.-M. (2006). Development of a fluorescence-based assay for screening of modulators of human organic anion transporter 1b3 (oatp1b3). European Journal of Pharmaceutics and Biopharmaceutics, 62(1), 39-43.
- [MHL+06]
- Moll, A., Hildebrandt, A., Lenhof, H.-P., & Kohlbacher, O. (2006). Ballview: a tool for research and education in molecular modeling. Bioinformatics, 22(3), 365-366.
- [ACL+06]
- Althaus, E., Caprara, A., Lenhof, H.-P., & Reinert, K. (2006). A branch-and-cut algorithm for multiple sequence alignment. Mathematical Programming, 105(2-3), 387-425.
- [KBG+06]
- Küntzer, J., Blum, T., Gerasch, A., Backes, C., Hildebrandt, A., Kaufmann, M., Kohlbacher, O., & Lenhof, H.-P. (2006). BN++ - A Biological Information System. Journal of Integrative Bioinformatics, 3(2), 34.
- [TBH+06]
- Toll, H., Berger, P., Hofmann, A., Hildebrandt, A., Oberacher, H., Lenhof, H.-P., & Huber, C. G. (2006). Glycosylation patterns of human chorionic gonadotropin revealed by liquid chromatography-mass spectrometry and bioinformatics. Electrophoresis, 27(13), 2734-46.
- [KLC+06]
- Keller, A., Ludwig, N., Comtesse, N., Hildebrandt, A., Meese, E., & Lenhof, H.-P. (2006). A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinformatics (7), 539.
- [MHL+05]
- Moll, A., Hildebrandt, A., Lenhof, H.-P. & Kohlbacher, O. (2005). BALLView: an object-oriented molecular visualization and modeling framework. J. Comput. Aided Mol. Des., 19(11), 791-800.
- [BKL+05]
- Backes, C., Küntzer, J., Lenhof, H.-P., Comtesse, N., & Meese, E. (2005). Grabcas: a bioinformatics tool for score-based prediction of caspase- and granzyme b-cleavage sites in protein sequences. Nucleic Acids Res., 33, 208-213.
- [CZW+05]
- Comtesse, N., Zippel, A., Walle, S., Monz, D., Backes, C., Fischer, U., Mayer, J., Ludwig, N., Hildebrandt, A., Keller, A., Steudel, W.-I., Lenhof, H.-P., & Meese, E. (2005). Complex humoral immune response against a benign tumor: frequent antibody response against specific antigens as diagnostic targets. PNAS, 102(27), 9601-06.
- [HBR+04]
- Hildebrandt, A., Blossey, R., Rjasanow, S., Kohlbacher, O., & Lenhof, H.-P. (2004). Novel formulation of nonlocal electrostatics. Phys. Rev. Lett., 93(10), 108104.
- [DHS+04]
- Dönnes, P., Höglund, A., Sturm, M., Comtesse, N., Backes, C., Meese, E., Kohlbacher, O., & Lenhof, H.-P. (2004). Integrative analysis of cancer-related data using cap. FASEB J., 18(12), 1465-7.
- [HL04]
- Ralf Hofestädt & H.-P. Lenhof (Eds.). (2004). Methoden und innovative anwendungen der informatik und informationstechnik. schwerpunktthema: molekulare bioinformatik. In H.-P. Hofestädt, & H.-P. Lenhof (Eds.), Information technology (it).
- [NLL+04]
- Neumann, D., Lehr, C., Lenhof, H., & Kohlbacher, O. (2004). Computational modeling of the sugar-lectin interaction. Advanced DRUG DELIVERY Reviews, 56(4), 437-457.
- [LS03]
- H.-P. Lenhof & M.-F. Sagot (Eds.). (2003). Proceedings - European Conference on Computational Biology (ECCB) 2003 . In H.-P. Lenhof, & M.-F. Sagot (Eds.), Bioinformatics 19 (Suppl. 2), 1-256.
- [NKL+02]
- Neumann, D., Kohlbacher, O., Lenhof, H.-P., & Lehr, C.-M. (2002). Lectin-sugar interactions: calculated versus experimental binding energies. Eur. J. Biochem., 269, 1518-1524.
- [SSE+02]
- Sirava, M., Schäfer, T., Eiglsperger, M., Kaufmann, M., Kohlbacher, O., Bornberg-Bauer, E., & Lenhof, H.-P. (2002). BioMiner - modeling, analysing, and visualizing biochemical pathways and networks. Bioinformatics, Proceedings of the European Conference on Computational Biology 2002, 18 (Suppl. 2), S219-S230.
- [ACL+02]
- Althaus, E., Caprara, A., Lenhof, H.-P., & Reinert, K. (2002). Multiple sequence alignment with arbitrary gap costs: computing an optimal solution using polyhedral combinatorics. Bioinformatics, Proceedings of the European Conference on Computational Biology 2002, 18 (Suppl. 2), 4-16.
- [LL02]
- Lengauer, T. & Lenhof, H.-P. (Eds.). (2002). European Conference on Computational Biology 2002. In T. Lengauer, & H.-P. Lenhof (Eds.), (pp. 1-260). Bioinformatics.
- [AKL+02]
- Althaus, E., Kohlbacher, O., Lenhof, H.-P., & Müller, P. (2002). A combinatorial approach to protein docking with flexible side chains. Journal of Computational Biology, 9(4), 597-612.
- [KBM+01]
- Kohlbacher, O., Burchardt, A., Moll, A., Hildebrandt, A., Bayer, P., & Lenhof, H.-P. (2001). A NMR-spectra-based scoring function for protein docking. In D. Sankoff, & T. Lengauer (Eds.), RECOMB 2001 - Proceedings of the Fifth Annual International Conference on Computational Molecular Biology (pp. 169-177). ACM press.
- [KBM+01]
- Kohlbacher, O., Burchardt, A., Moll, A., Hildebrandt, A., Bayer, P., & Lenhof, H.-P. (2001). Structure prediction of protein complexes by a NMR-based protein docking algorithm. J. Biomol. NMR, 20, 15-21.
- [KL00]
- Kohlbacher, O., & Lenhof, H.-P. (2000). BALL - Rapid Software Prototyping in Computational Molecular Biology. Bioinformatics, 16(9), 815-824.
- [KLM+00]
- Kececioglu, J., Lenhof, H., Mehlhorn, K., Mutzel, M., & Vingron, M. (2000). A polyhedral approach to sequence alignment problems. Discrete Applied Mathematics, 104, 143-186.
- [BKL00]
- Boghossian, N., Kohlbacher, O., & Lenhof, H.-P. (2000). Rapid software prototyping in molecular modeling using the biochemical algorithms library (ball). Journal of Experimental Algorithmics, 5(16).
- [JLM+00]
- Jung, B., Lenhof, H.-P., Müller, P., & Rüb, C. (2000). Simulating synthetic polymer chains in parallel. Future Generation Computer Systems, Elsevier Special Issues, 16, 513-522.
- [BKL99]
- Boghossian, N. P., Kohlbacher, O., & Lenhof, H.-P. (1999). BALL: Biochemical Algorithms Library. In J. Vitter, & C. Zaroliagis (Eds.), Lecture Notes in Computer Science (LNCS): Vol. 1668. Algorithm Engineering, 3rd International Workshop, WAE'99, Proceedings (pp. 330-344). Springer.
- [KL99]
- Kohlbacher, O., & Lenhof, H.-P. (1999). Rapid software prototyping in computational molecular biology. In XX (Ed.), Proceedings of the German Conference on Bioinformatics (GCB'99).
- [LMR99]
- Lenhof, H.-P., Morgenstern, B., & Reinert, K. (1999). An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics, 15(3), 203-210.
- [LRV98]
- Lenhof, H.-P., Reinert, K., & Vingron, M. (1998). A polyhedral approach to rna sequence structure alignment. Journal of Computational Biology, 5(3), 517-530.
- [VLM97]
- Vingron, M., Lenhof, H.-P., & Mutzel, P. (1997). Computational molecular biology. In Annotated Bibliographies in Combinatorial Optimization, M.Dell'Amico, F. Maffioli, & S. Martello (Eds.) (pp. 445-471). John Wiley and Sons, ISBN: 047196574X.
- [RLM+97]
- Reinert, K., Lenhof, H.-P., Mutzel, P., Mehlhorn, K., & Kececioglu, J.D. (1997). A branch-and-cut algorithm for multiple sequence alignment. RECOMB 1997 (241-250).
- [Len97]
- Lenhof, H.-P. (1997). New contact measures for the protein docking problem. Proc. of the First Annual International Conference on Computational Molecular Biology RECOMB 1997 (pp. 182-191).
- [JLM+97]
- Jung, B., Lenhof, H.-P., Müller, P., & Rüb, C. (1997). Langevin dynamics simulations of macromolecules on parallel computers. Macromol. Theory and Simul., 6, 507-521.
- [Len95]
- Lenhof, H.-P. (1995). An algorithm for the protein docking problem. German Conference on Bioinformatics, 18, 125-139.
- [LS95]
- Lenhof, H.-P., & Smid, M. (1995). Maintaining a visibility map of spheres while moving the viewpoint on a circle at infinity. Algorithmica, 13, 301-312.
- [DLS+95]
- Datta, A., Lenhof, H.-P., Schwarz, C., & Smid, M. (1995). Static and dynamic algorithms for the k-point clustering problems. Journal of Algorithms, 19, 474-503.
- [LS95]
- Lenhof, H.-P., & Smid, M. (1995). Sequential and parallel algorithms for the k closest pairs problem. Int. J. Comput. Geometry Appl., 5(3), 273-288.
- [LS94]
- Lenhof, H.-P., & Smid, M. (1994). Using persistant data structures for adding range restrictions to searching problems. RAIRO Theoretical Informatics and Application, 28, 25-49.
- [LS93]
- Lenhof, H.-P., & Smid, M. (1993). An optimal construction method for generalized convex layers. International Journal of Computational Geometry & Applications, 3(3), 245-267.
- [LS92]
- Lenhof, H.-P., & Smid, M. (1992). Maintaining the visibility map of spheres while moving the viewpoint on a circle at infinity. Third Scandinavian Workshop on Algorithm Theory (SWAT) (pp. 388-398).
- [LS92]
- Lenhof, H.-P., & Smid, M. (1992). Enumerating the k closest pairs optimally. Annual Symposium on Foundations of Computer Science (FOCS) (pp. 380-386).
- [LS91]
- Lenhof, H.-P., & Smid, M. (1991). An optimal construction method for generalized convex layers. International Symposium on Algorithms (ISA) (pp. 349-363).